PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028300001
Common NameGSBRNA2T00028300001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 234aa    MW: 26024.6 Da    PI: 5.0362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028300001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1774123254
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                           y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  GSBRNA2T00028300001  74 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAYATK 123
                          69*******.**********44465..*********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.52E-2873133No hitNo description
SMARTSM003801.2E-3474138IPR001471AP2/ERF domain
PROSITE profilePS5103221.86574132IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2174134IPR016177DNA-binding domain
PfamPF008472.5E-1174121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-2974133IPR001471AP2/ERF domain
PRINTSPR003673.8E-107586IPR001471AP2/ERF domain
PRINTSPR003673.8E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MYSSSSSWSS SQESFLWNES SFLDQSFFCP THNYSDDFFS FESPEMMIKE ETQNDDVSNS  60
EGEEKIGTID EEKSYRGVRK RPWGKFAAEI RDSTRNGIRV WLGTFDKAEE AALAYDQAAY  120
ATKGSLAVLN FPVEVVRESL KKMENVNLED GGSPVMALKR KHSLRNRPRG KKRSSNSSSA  180
SSSNSCSYSS SFSSSSLSSR SNKQSVVKQE SGTLVVFEDL GAEYLEQLLM SSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2773135163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894330.0AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132775.11e-169PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM01e-123ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A078K1151e-170A0A078K115_BRANA; BnaAnng40920D protein
STRINGBra022832.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-106ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]